/BCO-DMO/CopesPopDynHypoZone/Atonsa_mortality_daytrips --cruise eq 1-- Level 1

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#   Acartia tonsa mortality via neutral red vital staining of vertical net tows and associated CTD information
#    Collected on 5 day trips to mid-Chesapeake Bay, Aug-Oct 2013
#   M. Roman; J. Pierson; C. Fitzgerald (UMCES)
#   version: 2018-01-12
# 
=========================
cruise    date         
-------------------------
1         2013-08-02   
=========================
time_EDT    EDT_DOY    Station    Lateral_station    Sample_num    Low_depth    High_depth    Genus          Species    Stage         Alive    Dead    Percent_live    Percent_dead    Photo_files                                                  Comments                                                                                                                    Latitude    Longitude    Year    Month    CTD_Day    GMT_Hour    Minute    Second    GMT_DOY    prSM     t090C    c0S_m     sbeox0V    wetStar    obs       bat         xmiss      sbeox0Mg_L    sbeox0PS    sigma_t00    depSM    sal00    nbin    flag    
-------------------------
1150        214.49     MB         M2                 1             20           10            Acartia        tonsa      Nauplius      1        3       25              75              nd                                                           nd                                                                                                                          38.46993    -76.38862    2013    8        2          14          46        31        214.62     15.11    17.19    3.6902    0.6149     2.5838     1.4335    3.4522      70.8245    0.3547        4.3206      20.1226      15       28.02    3.43    0       
1150        214.49     MB         M2                 1             20           10            Acartia        tonsa      Egg           22       13      63              37              nd                                                           nd                                                                                                                          38.46993    -76.38862    2013    8        2          14          46        31        214.62     15.11    17.19    3.6902    0.6149     2.5838     1.4335    3.4522      70.8245    0.3547        4.3206      20.1226      15       28.02    3.43    0       
1157        214.50     MB         M2                 2             10           0             Acartia        tonsa      Adult         7        3       70              30              2013_08_05_018 and 2013_08_05_019                            Unknown copepod: 1 live                                                                                                     38.46993    -76.38862    2013    8        2          14          46        31        214.62     5.29     17.49    2.5265    2.3710     15.3190    1.4109    16.3883     57.4912    6.9308        80.6663     12.6424      5.25     18.30    3.15    0       
1157        214.50     MB         M2                 2             10           0             Acartia        tonsa      Copepodite    40       33      55              45              nd                                                           Possible count inaccuracies due to late identification of Oithona; some                                                     38.46993    -76.38862    2013    8        2          14          46        31        214.62     5.29     17.49    2.5265    2.3710     15.3190    1.4109    16.3883     57.4912    6.9308        80.6663     12.6424      5.25     18.30    3.15    0       
1157        214.50     MB         M2                 2             10           0             Acartia        tonsa      Nauplius      62       235     21              79              nd                                                           of the copepodite Acartia may actually be Oithona. Eggs and Nauplii are fine though                                         38.46993    -76.38862    2013    8        2          14          46        31        214.62     5.29     17.49    2.5265    2.3710     15.3190    1.4109    16.3883     57.4912    6.9308        80.6663     12.6424      5.25     18.30    3.15    0       
1157        214.50     MB         M2                 2             10           0             Acartia        tonsa      Egg           39       7       85              15              nd                                                           nd                                                                                                                          38.46993    -76.38862    2013    8        2          14          46        31        214.62     5.29     17.49    2.5265    2.3710     15.3190    1.4109    16.3883     57.4912    6.9308        80.6663     12.6424      5.25     18.30    3.15    0       
1157        214.50     MB         M2                 2             10           0             Oithona        sp.        nd            21       40      34              66              nd                                                           nd                                                                                                                          38.46993    -76.38862    2013    8        2          14          46        31        214.62     5.29     17.49    2.5265    2.3710     15.3190    1.4109    16.3883     57.4912    6.9308        80.6663     12.6424      5.25     18.30    3.15    0       
1218        214.51     M3         NaN                3             10           0             Acartia        tonsa      Adult         5        0       100             0               subsample 1: 2013_08_06_020 and 2013_08_06_021               Likely some of sample lost during collection due to leaky vacuum filtration system                                          38.46082    -76.41212    2013    8        2          16          8         53        214.67     5.29     17.77    2.4915    2.5616     23.7142    1.6923    25.2918     49.1376    7.6155        89.1165     12.2742      5.25     17.90    3.25    0       
1218        214.51     M3         NaN                3             10           0             Acartia        tonsa      Copepodite    10       12      45              55              subsample 2: 2013_08_06_022 and 2013_08_06_023               Suggest nauplii stages 1-4/5 don't take up the stain; don't stain clearly;                                                  38.46082    -76.41212    2013    8        2          16          8         53        214.67     5.29     17.77    2.4915    2.5616     23.7142    1.6923    25.2918     49.1376    7.6155        89.1165     12.2742      5.25     17.90    3.25    0       
1218        214.51     M3         NaN                3             10           0             Acartia        tonsa      Nauplius      22       169     12              88              nd                                                           stain is shielded from acidic conditions; or stain leeches out during storage;                                              38.46082    -76.41212    2013    8        2          16          8         53        214.67     5.29     17.77    2.4915    2.5616     23.7142    1.6923    25.2918     49.1376    7.6155        89.1165     12.2742      5.25     17.90    3.25    0       
1218        214.51     M3         NaN                3             10           0             Acartia        tonsa      Egg           32       8       80              20              nd                                                           all small nauplii always fall into "dead" category.                                                                         38.46082    -76.41212    2013    8        2          16          8         53        214.67     5.29     17.77    2.4915    2.5616     23.7142    1.6923    25.2918     49.1376    7.6155        89.1165     12.2742      5.25     17.90    3.25    0       
1218        214.51     M3         NaN                3             10           0             Oithona        sp.        nd            1        1       50              50              nd                                                           nd                                                                                                                          38.46082    -76.41212    2013    8        2          16          8         53        214.67     5.29     17.77    2.4915    2.5616     23.7142    1.6923    25.2918     49.1376    7.6155        89.1165     12.2742      5.25     17.90    3.25    0       
1401        214.58     M7         M3                 4             5            0             Acartia        tonsa      Copepodite    12       1       92              8               subsample 2: 2013_08_06_026 and 2013_08_06_028               Sample overstained; combined with darkened room this helped distinguish                                                     38.48245    -76.35638    2013    8        2          17          47        47        214.74     0.50     19.12    2.5183    2.9580     -2.3668    3.4191    140.1600    -1.9366    9.1685        109.9300    11.6940      0.5      17.53    2.00    0       
1401        214.58     M7         M3                 4             5            0             Acartia        tonsa      Nauplius      38       35      52              48              nd                                                           nauplii in stages 3-5. Very small nauplii still all appeared dead.                                                          38.48245    -76.35638    2013    8        2          17          47        47        214.74     0.50     19.12    2.5183    2.9580     -2.3668    3.4191    140.1600    -1.9366    9.1685        109.9300    11.6940      0.5      17.53    2.00    0       
1401        214.58     M7         M3                 4             5            0             Acartia        tonsa      Egg           12       1       92              8               nd                                                           Sample dominated by debris.                                                                                                 38.48245    -76.35638    2013    8        2          17          47        47        214.74     0.50     19.12    2.5183    2.9580     -2.3668    3.4191    140.1600    -1.9366    9.1685        109.9300    11.6940      0.5      17.53    2.00    0